##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index5_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20667670	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.0337630705348	33.0	31.0	34.0	30.0	34.0
2	32.18562068196366	33.0	31.0	34.0	30.0	34.0
3	32.253983975939235	34.0	31.0	34.0	30.0	34.0
4	35.731594949987105	37.0	35.0	37.0	33.0	37.0
5	35.714564341311814	37.0	35.0	37.0	33.0	37.0
6	35.67878280425418	37.0	35.0	37.0	33.0	37.0
7	35.695053772389436	37.0	35.0	37.0	33.0	37.0
8	35.67543607963549	37.0	35.0	37.0	33.0	37.0
9	37.33980284182977	39.0	37.0	39.0	34.0	39.0
10-14	37.54477199413384	39.2	37.2	39.4	33.8	39.4
15-19	38.50132384540686	40.0	38.0	41.0	34.0	41.0
20-24	38.29702336064007	40.0	38.0	41.0	33.4	41.0
25-29	37.986164942637465	40.0	37.8	41.0	33.0	41.0
30-34	37.759364466338006	40.0	37.2	41.0	32.4	41.0
35-39	37.798056829821654	40.0	37.0	41.0	32.4	41.0
40-44	37.45586877475787	39.6	36.6	41.0	31.4	41.0
45-49	36.97914157715892	39.0	35.4	40.8	30.6	41.0
50-54	36.62135559547835	38.8	35.0	40.0	30.4	41.0
55-59	36.30263850738859	38.2	35.0	40.2	30.0	41.0
60-64	35.490204498136464	37.0	34.0	40.0	28.8	41.0
65-69	34.57184374436015	35.6	33.6	39.0	27.8	40.8
70-74	33.599300646855696	35.0	33.0	37.8	26.4	39.8
75-79	32.57424413105105	35.0	32.0	36.4	25.6	38.8
80-84	31.484745943785633	34.4	31.2	35.2	23.8	37.0
85-89	30.250145933237757	34.0	30.6	35.0	15.0	36.0
90	29.172607216972207	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	239.0
11	2252.0
12	6733.0
13	13481.0
14	21869.0
15	29964.0
16	37744.0
17	44921.0
18	52245.0
19	59724.0
20	70494.0
21	82026.0
22	96302.0
23	112338.0
24	134182.0
25	159953.0
26	192623.0
27	233335.0
28	283244.0
29	345444.0
30	425871.0
31	530955.0
32	673115.0
33	878343.0
34	1202836.0
35	1745124.0
36	2702112.0
37	3914136.0
38	4332868.0
39	2244766.0
40	38431.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.338771617700495	12.15428250983299	11.067299797219523	52.43964607524699
2	21.77101572950994	18.813464069879853	35.18993979574193	24.22558040486828
3	25.779106676136305	21.089159053905814	22.49451214704324	30.637222122914643
4	27.714713557285787	26.7918263038745	19.211485378533936	26.281974760305783
5	29.308616919172387	29.507577785667554	21.62167605032835	19.56212924483171
6	24.618792708617455	32.534050159960664	21.609634423936193	21.23752270748568
7	21.54114489130783	19.000574246890157	37.288329334511445	22.169951527290568
8	21.616876943710693	22.41814366297989	29.033354698574676	26.93162469473474
9	21.485464846046888	21.19485032323758	31.56510692006143	25.7545779106541
10-14	24.46133805435487	26.266847331932997	24.699576211055014	24.572238402657128
15-19	24.796594401785764	25.18572286754267	25.175838964833602	24.841843765837968
20-24	24.582664299928485	25.437664483363182	25.51008417102408	24.469587045684257
25-29	24.41737108431697	25.458472988348923	25.47089845177758	24.65325747555653
30-34	24.46136925944283	25.41603686349816	25.396616319574285	24.725977557484732
35-39	24.47552088213223	25.55574299062463	25.370485166106704	24.598250961136433
40-44	24.41751673858591	25.3903955597581	25.5294526234264	24.662635078229588
45-49	24.38197626558231	25.459035099955972	25.427630367694814	24.731358266766904
50-54	24.39932797205751	25.557381548978636	25.46641885196791	24.576871626995946
55-59	24.408042669451444	25.500631716050503	25.41934769502971	24.671977919468347
60-64	24.330552778837465	25.523676214798545	25.527743473221154	24.618027533142833
65-69	24.36013697076853	25.634638701677233	25.494889754108023	24.51033457344621
70-74	24.417009627417045	25.568909298830267	25.41686989570754	24.59721117804515
75-79	24.403534370840127	25.530691581343827	25.47278847006607	24.592985577749968
80-84	24.356702768045267	25.666893615830315	25.464212944684416	24.512190671440003
85-89	24.46181289137531	25.623948033164968	25.368624972832563	24.545614102627155
90	24.216071371544864	25.736442435450424	25.56268767787968	24.484798515125032
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.77841769294749
2	45.996596134378215
3	56.416328799050945
4	53.99668831759157
5	48.87074616400409
6	45.856315416103136
7	43.7110964185984
8	48.54850163844544
9	47.24004275670099
10-14	49.03357645701199
15-19	49.63843816762373
20-24	49.052251345612746
25-29	49.0706285598735
30-34	49.187346816927565
35-39	49.07377184326866
40-44	49.0801518168155
45-49	49.113334532349214
50-54	48.97619959905345
55-59	49.08002058891979
60-64	48.9485803119803
65-69	48.870471544214745
70-74	49.014220805462195
75-79	48.9965199485901
80-84	48.86889343948527
85-89	49.007426994002465
90	48.7008698866699
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	11.0
1	8.5
2	4.5
3	3.5
4	9.0
5	11.5
6	10.0
7	15.5
8	31.0
9	56.5
10	71.0
11	85.0
12	128.5
13	219.0
14	354.5
15	594.0
16	1026.0
17	1794.5
18	3016.5
19	5133.0
20	6529.0
21	8728.0
22	14415.5
23	22857.0
24	34401.5
25	50933.5
26	73586.5
27	102826.5
28	137269.5
29	177362.0
30	199539.0
31	222133.5
32	268844.5
33	320575.0
34	375417.0
35	427702.0
36	480942.0
37	538800.5
38	587776.5
39	627934.0
40	648791.0
41	660856.0
42	685848.0
43	708711.5
44	720968.0
45	723964.5
46	720632.0
47	712654.5
48	708994.5
49	708041.0
50	706779.0
51	699533.5
52	691203.0
53	679550.5
54	672722.5
55	672324.5
56	660928.5
57	646827.0
58	626948.5
59	600532.5
60	587152.0
61	571581.0
62	538361.5
63	495873.5
64	445203.0
65	395246.0
66	342048.0
67	285108.0
68	233225.0
69	184064.0
70	158918.0
71	136899.0
72	97179.0
73	65963.0
74	41735.5
75	24031.0
76	13013.0
77	6612.0
78	3033.0
79	1280.0
80	731.0
81	510.5
82	205.5
83	96.0
84	56.5
85	33.0
86	19.5
87	15.0
88	9.0
89	4.5
90	6.0
91	3.5
92	3.5
93	3.5
94	1.0
95	0.5
96	0.5
97	0.5
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.017016915791668825
3	0.03847071295409691
4	0.047862192496783626
5	0.05246842048474744
6	0.004969113596259279
7	0.019760330990382564
8	0.01579762014779605
9	0.013736429892677789
10-14	0.018839085392789803
15-19	0.00843926770651941
20-24	0.0044233336413828945
25-29	0.002094091883603715
30-34	0.0043333380105256185
35-39	0.0017650755987491577
40-44	8.873762741518517E-4
45-49	0.0034885403144137676
50-54	3.7256255785001407E-4
55-59	0.003055012974370115
60-64	8.980209186618521E-4
65-69	0.004332370315570163
70-74	0.004462041439601078
75-79	0.008556358796129414
80-84	0.006618065800353886
85-89	0.006684836752280252
90	0.002951469614136475
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.066767E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	51.29855672897287
#Duplication Level	Relative count
1	100.0
2	29.441286373032277
3	15.120647161710924
4	9.11412784226427
5	6.349379869613611
6	4.590356177452695
7	3.5965574813165846
8	2.857171251391318
9	2.314557163301002
10++	25.37565590713945
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4351240	2.617764	5.483373	1
CCTGG	4344675	2.5990746	6.266369	1
CTTCT	4576920	2.5295484	5.7267513	1
CTGGA	4185150	2.4704435	8.873981	1
TCCAG	4110345	2.3768394	5.8780646	2
CTGCT	4062105	2.3356981	5.1552014	1
CTCCT	4100060	2.3094761	7.7878222	1
CTGGG	3769740	2.302052	8.667321	1
CAGGA	3791090	2.250526	5.493905	1
CCCAG	3734920	2.2011845	7.415673	1
CTTCA	3955420	2.1984587	5.802502	1
CTCCA	3863690	2.1886766	8.247443	1
CTCTG	3584290	2.060956	6.4982305	1
CTGCA	3452560	1.9964703	5.055841	1
CTGGC	3146715	1.88243	5.4964533	1
TGGAA	3229685	1.8811635	5.1210227	2
CTGAA	3272085	1.8670185	5.611231	1
CTCAG	3040500	1.7581931	6.2953	1
CTTTG	3029465	1.7091411	5.0860624	1
CTGGT	2842125	1.6682112	5.1854434	1
CTTGG	2783360	1.6337186	5.3962646	1
CTCCC	2727735	1.565954	5.2423525	1
>>END_MODULE
